SELECT 
  cscart_ult_product_prices.product_id, 
  MIN(
    IF(
      cscart_ult_product_prices.percentage_discount = 0, 
      cscart_ult_product_prices.price, 
      cscart_ult_product_prices.price - (
        cscart_ult_product_prices.price * cscart_ult_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_ult_product_prices 
WHERE 
  cscart_ult_product_prices.product_id IN (
    148, 180, 18, 16, 4, 5, 23, 24, 1, 22, 149, 
    227, 190, 189, 245, 238, 239, 242, 243, 
    241, 240, 214, 217, 218, 207, 59, 58, 
    60, 172, 134, 135, 168
  ) 
  AND cscart_ult_product_prices.lower_limit = 1 
  AND cscart_ult_product_prices.company_id = 1 
  AND cscart_ult_product_prices.usergroup_id IN (0, 0, 1) 
GROUP BY 
  cscart_ult_product_prices.product_id

Query time 0.00081

JSON explain

{
  "query_block": {
    "select_id": 1,
    "cost_info": {
      "query_cost": "60.00"
    },
    "grouping_operation": {
      "using_temporary_table": true,
      "using_filesort": true,
      "table": {
        "table_name": "cscart_ult_product_prices",
        "access_type": "ref",
        "possible_keys": [
          "usergroup",
          "product_id",
          "company_id",
          "lower_limit",
          "usergroup_id"
        ],
        "key": "company_id",
        "used_key_parts": [
          "company_id"
        ],
        "key_length": "4",
        "ref": [
          "const"
        ],
        "rows_examined_per_scan": 240,
        "rows_produced_per_join": 9,
        "filtered": "3.89",
        "index_condition": "(`rajansecarter_single_store_19_jan`.`cscart_ult_product_prices`.`company_id` <=> 1)",
        "cost_info": {
          "read_cost": "12.00",
          "eval_cost": "1.86",
          "prefix_cost": "60.00",
          "data_read_per_join": "298"
        },
        "used_columns": [
          "product_id",
          "price",
          "percentage_discount",
          "lower_limit",
          "company_id",
          "usergroup_id"
        ],
        "attached_condition": "((`rajansecarter_single_store_19_jan`.`cscart_ult_product_prices`.`lower_limit` = 1) and (`rajansecarter_single_store_19_jan`.`cscart_ult_product_prices`.`product_id` in (148,180,18,16,4,5,23,24,1,22,149,227,190,189,245,238,239,242,243,241,240,214,217,218,207,59,58,60,172,134,135,168)) and (`rajansecarter_single_store_19_jan`.`cscart_ult_product_prices`.`usergroup_id` in (0,0,1)))"
      }
    }
  }
}

Result

product_id price
1 5399.990000
4 699.990000
5 899.990000
16 349.990000
18 299.990000
22 799.990000
23 599.990000
24 449.990000
58 779.000000
59 599.000000
60 1499.000000
134 89.990000
135 0.000000
148 130.000000
149 53.990000
168 1.000000
172 299.990000
180 1000.000000
189 1.000000
190 899.950000
207 42.000000
214 1000.000000
217 610.990000
218 459.990000
227 699.000000
238 499.990000
239 509.990000
240 499.000000
241 499.000000
242 249.000000
243 249.000000
245 699.000000